Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
REST

Cell type

Cell type Class
Neural
Cell type
U-87 MG
Primary Tissue
Brain
Tissue Diagnosis
Glioblastoma

Attributes by original data submitter

Sample

source_name
U87 REST ChIPseq IDH1mut
cell type
U87 human glioma cell line
tissue
brain
genotype
IDH1 knockdown
sample type
IDH1 mutant-U-87 isogenic cell line
transfection
untreated
chip antibody
REST antibody (Merck-Millipore, 17-641)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
33666713
Reads aligned (%)
98.7
Duplicates removed (%)
7.1
Number of peaks
3085 (qval < 1E-05)

hg19

Number of total reads
33666713
Reads aligned (%)
97.8
Duplicates removed (%)
8.2
Number of peaks
3188 (qval < 1E-05)

Base call quality data from DBCLS SRA