Antigen

Antigen Class

TFs and others

Antigen

REST

Cell type

Cell type Class

Neural

Cell type

U-87 MG

Primary Tissue

Brain

Tissue Diagnosis

Glioblastoma

Sample

source_name

U87 REST ChIPseq IDH1mut

cell type

U87 human glioma cell line

tissue

brain

genotype

IDH1 knockdown

sample type

IDH1 mutant-U-87 isogenic cell line

transfection

untreated

chip antibody

REST antibody (Merck-Millipore, 17-641)

Sequenced DNA Library

library_name

ERROR: cannot retrieve data from NCBI: too many requests

library_strategy

ERROR: cannot retrieve data from NCBI: too many requests

library_source

ERROR: cannot retrieve data from NCBI: too many requests

library_selection

ERROR: cannot retrieve data from NCBI: too many requests

library_construction_protocol

ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model

ERROR: cannot retrieve data from NCBI: too many requests

cycle_sequence

ERROR: cannot retrieve data from NCBI: too many requests

cycle_count

ERROR: cannot retrieve data from NCBI: too many requests

flow_sequence

ERROR: cannot retrieve data from NCBI: too many requests

flow_count

ERROR: cannot retrieve data from NCBI: too many requests

key_sequence

ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads

33666713

Reads aligned (%)

98.7

Duplicates removed (%)

7.1

Number of peaks

3085 (qval < 1E-05)

hg19

Number of total reads

33666713

Reads aligned (%)

97.8

Duplicates removed (%)

8.2

Number of peaks

3188 (qval < 1E-05)